Richard Resnick: Welcome to the genomic revolution
July 6, 2011
In this accessible talk from TEDxBoston, Richard Resnick shows how cheap and fast genome sequencing is about to turn health care (and insurance, and politics) upside down.
(Filmed at TEDxBoston.)
Richard Resnick is on the front lines of the business of genomes, as CEO of GenomeQuest, a maker of genomic software. Full bio
Double-click the English subtitles below to play the video.
Ladies and gentlemen,
I present to you the human genome.
Chromosome one, top left.
Bottom right are the sex chromosomes.
Women have two copies of that big X chromosome;
men have the X
and, of course, that small copy of the Y.
Sorry boys, but it's just a tiny little thing that makes you different.
So if you zoom in on this genome,
then what you see, of course, is this double helix structure --
the code of life spelled out with these four biochemical letters,
or we call them bases, right:
A, C, G and T.
How many are there in the human genome? Three billion.
Is that a big number?
Well, everybody can throw around big numbers.
But in fact, if I were to place one base
on each pixel of this 1280 by 800 resolution screen,
we would need 3,000 screens to take a look at the genome.
So it's really quite big.
And perhaps because of its size,
a group of people -- all, by the way, with Y chromosomes --
decided they would want to sequence it.
And so 15 years, actually, and about four billion dollars later,
the genome was sequenced and published.
In 2003, the final version was published, and they keep working on it.
That was all done on a machine that looks like this.
It costs about a dollar for each base --
a very slow way of doing it.
Well folks, I'm here to tell you
that the world has completely changed
and none of you know about it.
So now what we do is we take a genome,
we make maybe 50 copies of it,
we cut all those copies up into little 50-base reads,
and then we sequence them, massively parallel.
And then we bring that into software,
and we reassemble it and we tell you what the story is.
And so just to give you a picture of what this looks like,
the Human Genome Project: 3 gigabases, right.
One run on one of these machines:
200 gigabases in a week.
And that 200 is going to change to 600 this summer,
and there's no sign of this pace slowing.
So the price of a base, to sequence a base,
has fallen 100 million times.
That's the equivalent of you filling up your car with gas in 1998,
waiting until 2011,
and now you can drive to Jupiter and back twice.
the archive of all the medical literature,
the old way of sequencing, and here's all the new stuff.
Guys, this is a log scale;
you don't typically see lines that go up like that.
So the worldwide capacity to sequence human genomes
is something like 50,000 to 100,000 human genomes this year.
And we know this based on the machines that are being placed.
This is expected to double, triple or maybe quadruple
year over year for the foreseeable future.
In fact, there's one lab in particular
that represents 20 percent of all that capacity.
It's called the Beijing Genomics Institute.
The Chinese are absolutely winning this race to the new Moon, by the way.
What does this mean for medicine?
So a woman is age 37.
She presents with stage 2 estrogen receptor-positive breast cancer.
She is treated with surgery, chemotherapy and radiation.
She goes home.
Two years later, she comes back with stage three C ovarian cancer.
Unfortunately, treated again with surgery and chemotherapy.
She comes back three years later at age 42
with more ovarian cancer, more chemotherapy.
Six months later,
she comes back with acute myeloid leukemia.
She goes into respiratory failure and dies eight days later.
So first, the way in which this woman was treated, in as little as 10 years,
will look like bloodletting.
And it's because of people like my colleague, Rick Wilson,
at the Genome Institute at Washington University,
who decided to take a look at this woman postmortem.
And he sequenced, he took skin cells, healthy skin,
and cancerous bone marrow,
and he sequenced the whole genomes of both of them
in a couple of weeks, no big deal.
And then he compared those two genomes in software,
and what he found, among other things,
was a deletion, a 2,000-base deletion
across three billion bases
in a particular gene called TP53.
If you have this deleterious mutation in this gene,
you're 90 percent likely to get cancer in your life.
So unfortunately, this doesn't help this woman,
but it does have severe, profound if you will,
implications to her family.
I mean, if they have the same mutation,
and they get this genetic test, and they understand it,
then they can go and get regular screens, and they can catch cancer early
and potentially live a significantly longer life.
Let me introduce you now to the Beery twins,
diagnosed with cerebral palsy at the age of two.
Their mom is a very brave woman
who didn't believe that the symptoms weren't matching up,
and through some heroic efforts and a lot of Internet searching,
she was able to convince the medical community
that, in fact, they had something else.
What they had was dopa-responsive dystonia.
And so they were given L-Dopa,
and their symptoms did improve,
but they weren't totally asymptomatic.
Significant problems remained.
Turns out the gentleman in this picture is a guy named Joe Beery,
who was lucky enough to be the CIO
of a company called Life Technologies.
They're one of the two companies
that makes these massive whole genome sequencing tools.
And so what he did was he got his kids sequenced.
And what they found was a series of mutations in a gene called SPR,
which is responsible for producing serotonin, among other things.
So on top of L-Dopa, they gave these kids a serotonin precursor drug,
and they're effectively normal now.
Guys, this would never have happened without whole genome sequencing.
And at the time -- this was a few years ago -- it cost $100,000.
Today it's $10,000. Next year it's $1,000.
The year after it's $100, give or take a year.
That's how fast this is moving.
So here's little Nick --
likes Batman and squirt guns.
And it turns out Nick shows up at the children's hospital
with this distended belly like a famine victim.
And it's not that he's not eating,
it's that when he eats, his intestine basically opens up
and feces spill out into his gut.
So a hundred surgeries later,
he looks at his mom and says, "Mom,
please pray for me. I'm in so much pain."
His pediatrician happens to have a background in clinical genetics
and he has no idea what's going on,
but he says, "Let's get this kid's genome sequenced."
And what they find is a single-point mutation
in a gene responsible for controlling programmed cell death.
So the theory is that he's having some immunological reaction
to what's going on to the food essentially,
and that's a natural reaction, which causes some programmed cell death.
But the gene that regulates that down is broken.
And so this informs, among other things, of course,
a treatment for bone marrow transplant, which he undertakes.
And after nine months of grueling recovery,
he's now eating steak with A1 sauce.
The prospect of using the genome
as a universal diagnostic
is upon us today.
Today, it's here.
And what it means for all of us
is that everybody in this room could live an extra five, 10, 20 years
just because of this one thing.
Which is a fantastic story,
unless you think about humanity's footprint on the planet
and our ability to keep up food production.
So it turns out
that the very same technology
is also being used to grow new lines
of corn, wheat, soybean and other crops
that are highly tolerant of drought, of flood,
of pests and pesticides.
Now look, as long as we continue to increase the population,
we're going to have to continue to grow and eat genetically modified foods,
and that's the only position that I'll take today.
Unless there's anybody in the audience
that would like to volunteer to stop eating?
None, not one.
This is a typewriter,
a staple of every desktop for decades.
And in fact, the typewriter was essentially deleted by this thing.
And then more general versions of word processors came about.
But ultimately, it was a disruption on top of a disruption.
It was Bob Metcalfe inventing the Ethernet
and the connection of all these computers
that fundamentally changed everything.
And suddenly we had Netscape, and we had Yahoo
and we had, indeed, the entire dotcom bubble.
Not to worry though,
that was quickly rescued by the iPod, Facebook
and, indeed, angry birds.
Look, this is where we are today.
This is the genomic revolution today. This is where we are.
So what I'd like you to consider is:
What does it mean
when these dots don't represent the individual bases of your genome,
but they connect to genomes all across the planet?
So I just recently had to buy life insurance.
And I was required to answer:
A. I have never had a genetic test, B. I've had one, here you go,
and C. I've had one and I'm not telling.
Thankfully, I was able to answer A,
and I say that honestly in case my life insurance agent is listening.
But what would have happened if I had said C?
Consumer applications for genomics, they will flourish.
Do you want to see whether you're genetically compatible
with your girlfriend? Sure.
DNA sequencing on your iPhone? There's an app for that.
Personalized genomic massage anyone?
There's already a lab today
that tests for allele 334 of the AVPR1 gene,
the so-called cheating gene.
So anybody who's here today with your significant other,
just turn over to them and swab their mouth,
send it to the lab and you'll know for sure.
Do you really want to elect a president
whose genome suggests cardiomyopathy?
Now think of it, it's 2016
and the leading candidate releases
not only her four years of back tax returns,
but also her personal genome.
And it looks really good.
And then she challenges all of her competitors to do the same.
Do you think that's not going to happen?
Do you think it would have helped John McCain?
How many people in the audience
have the last name Resnick like me? Raise your hand.
Typically, there's one or two.
So my father's father was one of 10 Resnick brothers.
They all hated each other.
And they all moved to different parts of the planet.
So it's likely
that I'm related to every Resnick that I ever meet, but I don't know.
But imagine if my genome were deidentified, sitting in software,
and a third cousin's genome was also sitting there,
and there was software that could compare these two
and make these associations.
Not hard to imagine. My company has software that does this right now.
And so imagine one more thing:
that that software is able to ask both parties for mutual consents,
"Would you be willing to meet your third cousin?"
And if we both say yes,
voila! Welcome to chromosomally LinkedIn.
Now this is probably a good thing, right?
You have bigger clan gatherings and so on.
But maybe it's a bad thing as well.
How many fathers in the room? Raise your hands.
Okay, so experts think that one to three percent of you
are not actually the father of your child.
These genomes, these 23 chromosomes,
they don't in any way represent the quality of our relationships
or the nature of our society -- at least not yet.
And like any new technology,
it's really in humanity's hands
to wield it for the betterment of mankind, or not.
And so I urge you all to wake up and to tune in
and to influence the genomic revolution that's happening all around you.
Richard Resnick is on the front lines of the business of genomes, as CEO of GenomeQuest, a maker of genomic software.Why you should listen
Richard Resnick is CEO of GenomeQuest , a company that builds software to support genomic medicine -- research and individualized treatments that take advantage of cheap and accessible genome processing. He was previously CEO of Mosaic Bioinformatics; before becoming a bio-entrepreneur, he was a member of the Human Genome Project under Eric Lander at MIT.
The original video is available on TED.com